Human SNP ID | rs192549394 |
---|---|
Human chromosome | chr14 |
Human SNP position | 51827061 |
Pig chromosome | chr1 |
Pig SNP position | 201766227 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 14q22.1 |
Chromosome id | chr14 |
Chromosome position | 51827061 |
Reported gene | FRMD6, GNG2 |
Mapped gene | LOC101927598 - GNG2 |
Upstream gene id | 101927598 |
Downstream gene id | 54331 |
SNP gene ids | |
Upstream gene distance | 2042 |
Downstream gene distance | 20070 |
SNP risk allele | rs192549394-G |
SNPs | rs192549394 |
Merged | |
SNP id current | 192549394 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.01 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (EA) |
Or beta | 0.3949 |
%95 Ci | [0.24-0.55] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 14q22.1 |
Chromosome id | chr14 |
Chromosome position | 51827061 |
Reported gene | FRMD6, GNG2 |
Mapped gene | LOC101927598 - GNG2 |
Upstream gene id | 101927598 |
Downstream gene id | 54331 |
SNP gene ids | |
Upstream gene distance | 2042 |
Downstream gene distance | 20070 |
SNP risk allele | rs192549394-G |
SNPs | rs192549394 |
Merged | |
SNP id current | 192549394 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.01 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.3724 |
%95 Ci | [0.22-0.53] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |