SNP Detail For rs192419686
1.Mapping Information
Human SNP ID rs192419686
Human chromosome chr5
Human SNP position 45888273
Pig chromosome chr16
Pig SNP position 31461199
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region5p12
Chromosome idchr5
Chromosome position45888273
Reported geneIntergenic
Mapped geneHCN1 - EMB
Upstream gene id348980
Downstream gene id133418
SNP gene ids
Upstream gene distance192155
Downstream gene distance4507919
SNP risk allelers192419686-T
SNPsrs192419686
Merged0
SNP id current192419686
Contextupstream_gene_variant
Intergenic1
Allele frequency0.999
P value0.000004
Pvalue mlog5.39794000867203
P value text(AA)
Or beta0.321
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264