SNP Detail For rs1923539
1.Mapping Information
Human SNP ID rs1923539
Human chromosome chr10
Human SNP position 79935194
Pig chromosome chr14
Pig SNP position 88677199
2.Annotation Information
PubMed ID23144326
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/23144326
StudyGenome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease.
Disease/TraitChronic obstructive pulmonary disease-related biomarkers
Initial sampleUp to 1,951 European ancestry smokers
Replication sampleNA
Region10q22.3
Chromosome idchr10
Chromosome position79935194
Reported geneRP11-479O17.4
Mapped geneLOC100288974 - SFTPD
Upstream gene id100288974
Downstream gene id6441
SNP gene ids
Upstream gene distance3393
Downstream gene distance2546
SNP risk allelers1923539-A
SNPsrs1923539
Merged0
SNP id current1923539
Contextintron_variant
Intergenic1
Allele frequency0.25
P value0.000000005
Pvalue mlog8.30102999566398
P value text(SP-D)
Or beta
%95 Ci
PlatformIllumina [588352]
CNVN
Mapped traitchronic obstructive pulmonary disease, surfactant protein D measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0005081
Study accessionGCST001737