Human SNP ID | rs1923539 |
---|---|
Human chromosome | chr10 |
Human SNP position | 79935194 |
Pig chromosome | chr14 |
Pig SNP position | 88677199 |
PubMed ID | 23144326 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/23144326 |
Study | Genome-wide association analysis of blood biomarkers in chronic obstructive pulmonary disease. |
Disease/Trait | Chronic obstructive pulmonary disease-related biomarkers |
Initial sample | Up to 1,951 European ancestry smokers |
Replication sample | NA |
Region | 10q22.3 |
Chromosome id | chr10 |
Chromosome position | 79935194 |
Reported gene | RP11-479O17.4 |
Mapped gene | LOC100288974 - SFTPD |
Upstream gene id | 100288974 |
Downstream gene id | 6441 |
SNP gene ids | |
Upstream gene distance | 3393 |
Downstream gene distance | 2546 |
SNP risk allele | rs1923539-A |
SNPs | rs1923539 |
Merged | 0 |
SNP id current | 1923539 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.25 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | (SP-D) |
Or beta | |
%95 Ci | |
Platform | Illumina [588352] |
CNV | N |
Mapped trait | chronic obstructive pulmonary disease, surfactant protein D measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0005081 |
Study accession | GCST001737 |