SNP Detail For rs1910003
1.Mapping Information
Human SNP ID rs1910003
Human chromosome chr5
Human SNP position 125968854
Pig chromosome chr2
Pig SNP position 134479956
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitAntibody status in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region5q23.2
Chromosome idchr5
Chromosome position125968854
Reported geneNR
Mapped geneLOC105379160 - LOC105369178
Upstream gene id105379160
Downstream gene id105369178
SNP gene ids
Upstream gene distance140778
Downstream gene distance11620
SNP risk allelers1910003-?
SNPsrs1910003
Merged0
SNP id current1910003
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitantibody measurement, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004556, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002280