SNP Detail For rs1906493
1.Mapping Information
Human SNP ID rs1906493
Human chromosome chr8
Human SNP position 126080638
Pig chromosome chr4
Pig SNP position 14354797
2.Annotation Information
PubMed ID22412388
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22412388
StudyA genome-wide scan of Ashkenazi Jewish Crohn__s disease suggests novel susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample737 Ashkenazi Jewish cases, 2,257 Ashkenazi Jewish controls
Replication sample971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls
Region8q24.13
Chromosome idchr8
Chromosome position126080638
Reported geneintergenic
Mapped geneKNOP1P5 - LOC101927657
Upstream gene id100130158
Downstream gene id101927657
SNP gene ids
Upstream gene distance6391
Downstream gene distance244857
SNP risk allelers1906493-A
SNPsrs1906493
Merged0
SNP id current1906493
Contextintergenic_variant
Intergenic1
Allele frequency0.432
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.19
%95 Ci[1.09-1.28]
PlatformAffymetrix, Illumina [1060934] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001438