Human SNP ID | rs1906493 |
---|---|
Human chromosome | chr8 |
Human SNP position | 126080638 |
Pig chromosome | chr4 |
Pig SNP position | 14354797 |
PubMed ID | 22412388 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22412388 |
Study | A genome-wide scan of Ashkenazi Jewish Crohn__s disease suggests novel susceptibility loci. |
Disease/Trait | Crohn__s disease |
Initial sample | 737 Ashkenazi Jewish cases, 2,257 Ashkenazi Jewish controls |
Replication sample | 971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls |
Region | 8q24.13 |
Chromosome id | chr8 |
Chromosome position | 126080638 |
Reported gene | intergenic |
Mapped gene | KNOP1P5 - LOC101927657 |
Upstream gene id | 100130158 |
Downstream gene id | 101927657 |
SNP gene ids | |
Upstream gene distance | 6391 |
Downstream gene distance | 244857 |
SNP risk allele | rs1906493-A |
SNPs | rs1906493 |
Merged | 0 |
SNP id current | 1906493 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.432 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.09-1.28] |
Platform | Affymetrix, Illumina [1060934] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001438 |