SNP Detail For rs1904173
1.Mapping Information
Human SNP ID rs1904173
Human chromosome chr5
Human SNP position 25419980
Pig chromosome chr16
Pig SNP position 13383777
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region5p14.1
Chromosome idchr5
Chromosome position25419980
Reported geneNR
Mapped geneLOC105374693
Upstream gene id
Downstream gene id
SNP gene ids105374693
Upstream gene distance
Downstream gene distance
SNP risk allelers1904173-G
SNPsrs1904173
Merged0
SNP id current1904173
Contextintron_variant
Intergenic0
Allele frequency0.86006371714922
P value0.000007
Pvalue mlog5.15490195998574
P value text(IGP32)
Or beta0.201
%95 Ci[0.11-0.29] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848