Human SNP ID | rs1900005 |
---|---|
Human chromosome | chr10 |
Human SNP position | 68238298 |
Pig chromosome | chr14 |
Pig SNP position | 77468079 |
PubMed ID | 25241763 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25241763 |
Study | Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. |
Disease/Trait | Vertical cup-disc ratio |
Initial sample | 18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals |
Replication sample | 2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals |
Region | 10q21.3 |
Chromosome id | chr10 |
Chromosome position | 68238298 |
Reported gene | ATOH7 |
Mapped gene | ATOH7 - PBLD |
Upstream gene id | 220202 |
Downstream gene id | 64081 |
SNP gene ids | |
Upstream gene distance | 6185 |
Downstream gene distance | 44362 |
SNP risk allele | rs1900005-A |
SNPs | rs1900005 |
Merged | 0 |
SNP id current | 1900005 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 5E-31 |
Pvalue mlog | 30.3010299956639 |
P value text | |
Or beta | 0.018 |
%95 Ci | [0.014-0.022] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | optic disc size measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004832 |
Study accession | GCST002626 |