SNP Detail For rs1898910
1.Mapping Information
Human SNP ID rs1898910
Human chromosome chr5
Human SNP position 125220154
Pig chromosome chr2
Pig SNP position 133825175
2.Annotation Information
PubMed ID25524916
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/25524916
StudyGenetic Variants Associated with Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.
Disease/TraitGlucose homeostasis traits
Initial sampleup to 4,176 Mexican American individuals
Replication sampleNA
Region5q23.2
Chromosome idchr5
Chromosome position125220154
Reported geneintergenic
Mapped geneLOC101927421
Upstream gene id
Downstream gene id
SNP gene ids101927421
Upstream gene distance
Downstream gene distance
SNP risk allelers1898910-?
SNPsrs1898910
Merged0
SNP id current1898910
Contextintergenic_variant
Intergenic0
Allele frequency
P value0.000007
Pvalue mlog5.15490195998574
P value text(SI)
Or beta0.38
%95 Ci[0.2-0.56] unit decrease
PlatformIllumina [693128]
CNVN
Mapped traitinsulin sensitivity measurement, glucose homeostasis measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004471, http://www.ebi.ac.uk/efo/EFO_0006896
Study accessionGCST002726