SNP Detail For rs1898671
1.Mapping Information
Human SNP ID rs1898671
Human chromosome chr5
Human SNP position 111072304
Pig chromosome chr2
Pig SNP position 120319779
2.Annotation Information
PubMed ID22036096
JournalJ Allergy Clin Immunol
Linkwww.ncbi.nlm.nih.gov/pubmed/22036096
StudyA genome-wide meta-analysis of genetic variants associated with allergic rhinitis and grass sensitization and their interaction with birth order.
Disease/TraitAllergic rhinitis
Initial sample3,933 European ancestry cases, 8,965 European ancestry controls
Replication sampleNA
Region5q22.1
Chromosome idchr5
Chromosome position111072304
Reported geneTSLP
Mapped geneTSLP
Upstream gene id
Downstream gene id
SNP gene ids85480
Upstream gene distance
Downstream gene distance
SNP risk allelers1898671-T
SNPsrs1898671
Merged0
SNP id current1898671
Contextintron_variant
Intergenic0
Allele frequency0.35
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.15
%95 Ci[1.08-1.22]
PlatformAffymetrix, Illumina [2217510] (imputed)
CNVN
Mapped traitseasonal allergic rhinitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003956
Study accessionGCST001310