SNP Detail For rs189798
1.Mapping Information
Human SNP ID rs189798
Human chromosome chr8
Human SNP position 9133067
Pig chromosome chr15
Pig SNP position 63423258
2.Annotation Information
PubMed ID23049088
JournalInvest Ophthalmol Vis Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23049088
StudyA genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population.
Disease/TraitMyopia (pathological)
Initial sample187 European ancestry cases, 1064 European ancestry controls
Replication sample
Region8p23.1
Chromosome idchr8
Chromosome position9133067
Reported geneMYP10, PPP1R3B, MIR4660, MIR124-1, MSRA
Mapped geneERI1 - PPP1R3B
Upstream gene id90459
Downstream gene id79660
SNP gene ids
Upstream gene distance32811
Downstream gene distance3187
SNP risk allelers189798-?
SNPsrs189798
Merged0
SNP id current189798
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.658
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.92
%95 Ci[NR]
PlatformAffymetrix, Illumina [152234]
CNVN
Mapped traitpathological myopia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004207
Study accessionGCST001712