Human SNP ID | rs189798 |
---|---|
Human chromosome | chr8 |
Human SNP position | 9133067 |
Pig chromosome | chr15 |
Pig SNP position | 63423258 |
PubMed ID | 23049088 |
---|---|
Journal | Invest Ophthalmol Vis Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23049088 |
Study | A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population. |
Disease/Trait | Myopia (pathological) |
Initial sample | 187 European ancestry cases, 1064 European ancestry controls |
Replication sample | |
Region | 8p23.1 |
Chromosome id | chr8 |
Chromosome position | 9133067 |
Reported gene | MYP10, PPP1R3B, MIR4660, MIR124-1, MSRA |
Mapped gene | ERI1 - PPP1R3B |
Upstream gene id | 90459 |
Downstream gene id | 79660 |
SNP gene ids | |
Upstream gene distance | 32811 |
Downstream gene distance | 3187 |
SNP risk allele | rs189798-? |
SNPs | rs189798 |
Merged | 0 |
SNP id current | 189798 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.658 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.92 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [152234] |
CNV | N |
Mapped trait | pathological myopia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004207 |
Study accession | GCST001712 |