Human SNP ID | rs1896312 |
---|---|
Human chromosome | chr12 |
Human SNP position | 114908619 |
Pig chromosome | chr14 |
Pig SNP position | 39805584 |
PubMed ID | 20062060 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20062060 |
Study | Genome-wide association study of PR interval. |
Disease/Trait | PR interval |
Initial sample | 28,517 European ancestry individuals |
Replication sample | NA |
Region | 12q24.21 |
Chromosome id | chr12 |
Chromosome position | 114908619 |
Reported gene | TBX5, TBX3 |
Mapped gene | LOC105369999 - LOC102723639 |
Upstream gene id | 105369999 |
Downstream gene id | 102723639 |
SNP gene ids | |
Upstream gene distance | 172831 |
Downstream gene distance | 104568 |
SNP risk allele | rs1896312-C |
SNPs | rs1896312 |
Merged | 0 |
SNP id current | 1896312 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.28 |
P value | 0.00000000000000003 |
Pvalue mlog | 16.5228787452803 |
P value text | |
Or beta | 1.95 |
%95 Ci | [1.50-2.40] ms increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | PR interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004462 |
Study accession | GCST000562 |