SNP Detail For rs1896312
1.Mapping Information
Human SNP ID rs1896312
Human chromosome chr12
Human SNP position 114908619
Pig chromosome chr14
Pig SNP position 39805584
2.Annotation Information
PubMed ID20062060
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20062060
StudyGenome-wide association study of PR interval.
Disease/TraitPR interval
Initial sample28,517 European ancestry individuals
Replication sampleNA
Region12q24.21
Chromosome idchr12
Chromosome position114908619
Reported geneTBX5, TBX3
Mapped geneLOC105369999 - LOC102723639
Upstream gene id105369999
Downstream gene id102723639
SNP gene ids
Upstream gene distance172831
Downstream gene distance104568
SNP risk allelers1896312-C
SNPsrs1896312
Merged0
SNP id current1896312
Contextintergenic_variant
Intergenic1
Allele frequency0.28
P value0.00000000000000003
Pvalue mlog16.5228787452803
P value text
Or beta1.95
%95 Ci[1.50-2.40] ms increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitPR interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462
Study accessionGCST000562