SNP Detail For rs1894292
1.Mapping Information
Human SNP ID rs1894292
Human chromosome chr4
Human SNP position 73483441
Pig chromosome chr8
Pig SNP position 73808756
2.Annotation Information
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region4q13.3
Chromosome idchr4
Chromosome position73483441
Reported geneCOX18, AFM, RASSF6, ALB, AFP, ANKRD17, LOC72804, LOC728040
Mapped geneAFM
Upstream gene id
Downstream gene id
SNP gene ids173
Upstream gene distance
Downstream gene distance
SNP risk allelers1894292-G
SNPsrs1894292
Merged0
SNP id current1894292
Contextintron_variant
Intergenic0
Allele frequency0.52
P value0.0000000000005
Pvalue mlog12.3010299956639
P value text
Or beta1.1
%95 Ci[1.06-1.12]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942