SNP Detail For rs189419463
1.Mapping Information
Human SNP ID rs189419463
Human chromosome chr12
Human SNP position 107307709
Pig chromosome chr5
Pig SNP position 12935406
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region12q23.3
Chromosome idchr12
Chromosome position107307709
Reported geneIntergenic
Mapped geneSETP7 - BTBD11
Upstream gene id100873166
Downstream gene id121551
SNP gene ids
Upstream gene distance35866
Downstream gene distance9459
SNP risk allelers189419463-C
SNPsrs189419463
Merged0
SNP id current189419463
Contextintergenic_variant
Intergenic1
Allele frequency1
P value0.000003
Pvalue mlog5.52287874528033
P value text(AA)
Or beta5.813
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366
Study accessionGCST003262