SNP Detail For rs189340018
1.Mapping Information
Human SNP ID rs189340018
Human chromosome chr12
Human SNP position 107234902
Pig chromosome chr5
Pig SNP position 12999659
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region12q23.3
Chromosome idchr12
Chromosome position107234902
Reported geneIntergenic
Mapped geneCRY1 - SETP7
Upstream gene id1407
Downstream gene id100873166
SNP gene ids
Upstream gene distance141030
Downstream gene distance36483
SNP risk allelers189340018-C
SNPsrs189340018
Merged0
SNP id current189340018
Contextintergenic_variant
Intergenic1
Allele frequency1
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.804
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264