SNP Detail For rs1890645
1.Mapping Information
Human SNP ID rs1890645
Human chromosome chr1
Human SNP position 195562293
Pig chromosome chr10
Pig SNP position 23455095
2.Annotation Information
PubMed ID20662065
JournalArthritis Rheum
Linkwww.ncbi.nlm.nih.gov/pubmed/20662065
StudyIdentification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.
Disease/TraitNeonatal lupus
Initial sample116 European ancestry cases, 3,351 European ancestry controls
Replication sampleNA
Region1q31.3
Chromosome idchr1
Chromosome position195562293
Reported geneintergenic
Mapped geneLOC105371670 - LOC105371671
Upstream gene id105371670
Downstream gene id105371671
SNP gene ids
Upstream gene distance1262347
Downstream gene distance12107
SNP risk allelers1890645-?
SNPsrs1890645
Merged0
SNP id current1890645
Contextintergenic_variant
Intergenic1
Allele frequency0.3
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta2.98
%95 Ci[1.88-4.73]
PlatformIllumina [346110]
CNVN
Mapped traitneonatal systemic lupus erthematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004537
Study accessionGCST000738