Human SNP ID | rs1890645 |
---|---|
Human chromosome | chr1 |
Human SNP position | 195562293 |
Pig chromosome | chr10 |
Pig SNP position | 23455095 |
PubMed ID | 20662065 |
---|---|
Journal | Arthritis Rheum |
Link | www.ncbi.nlm.nih.gov/pubmed/20662065 |
Study | Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus. |
Disease/Trait | Neonatal lupus |
Initial sample | 116 European ancestry cases, 3,351 European ancestry controls |
Replication sample | NA |
Region | 1q31.3 |
Chromosome id | chr1 |
Chromosome position | 195562293 |
Reported gene | intergenic |
Mapped gene | LOC105371670 - LOC105371671 |
Upstream gene id | 105371670 |
Downstream gene id | 105371671 |
SNP gene ids | |
Upstream gene distance | 1262347 |
Downstream gene distance | 12107 |
SNP risk allele | rs1890645-? |
SNPs | rs1890645 |
Merged | 0 |
SNP id current | 1890645 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.3 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 2.98 |
%95 Ci | [1.88-4.73] |
Platform | Illumina [346110] |
CNV | N |
Mapped trait | neonatal systemic lupus erthematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004537 |
Study accession | GCST000738 |