SNP Detail For rs1888414
1.Mapping Information
Human SNP ID rs1888414
Human chromosome chr21
Human SNP position 20405418
Pig chromosome chr13
Pig SNP position 194325057
2.Annotation Information
PubMed ID19668339
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/19668339
StudyHippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer__s disease.
Disease/TraitHippocampal atrophy
Initial sample162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases
Replication sampleNA
Region21q21.1
Chromosome idchr21
Chromosome position20405418
Reported geneFDPSP
Mapped geneLOC105372745 - KRT18P2
Upstream gene id105372745
Downstream gene id54044
SNP gene ids
Upstream gene distance382753
Downstream gene distance19477
SNP risk allelers1888414-?
SNPsrs1888414
Merged0
SNP id current1888414
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [516645]
CNVN
Mapped traithippocampal atrophy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005039
Study accessionGCST000461