Human SNP ID | rs1888414 |
---|---|
Human chromosome | chr21 |
Human SNP position | 20405418 |
Pig chromosome | chr13 |
Pig SNP position | 194325057 |
PubMed ID | 19668339 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/19668339 |
Study | Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer__s disease. |
Disease/Trait | Hippocampal atrophy |
Initial sample | 162 European ancestry cases, 192 European ancestry controls, 7 African American cases, 14 African American controls, 1 Asian ancestry cases, 3 Asian ancestry controls, 2 cases |
Replication sample | NA |
Region | 21q21.1 |
Chromosome id | chr21 |
Chromosome position | 20405418 |
Reported gene | FDPSP |
Mapped gene | LOC105372745 - KRT18P2 |
Upstream gene id | 105372745 |
Downstream gene id | 54044 |
SNP gene ids | |
Upstream gene distance | 382753 |
Downstream gene distance | 19477 |
SNP risk allele | rs1888414-? |
SNPs | rs1888414 |
Merged | 0 |
SNP id current | 1888414 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [516645] |
CNV | N |
Mapped trait | hippocampal atrophy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005039 |
Study accession | GCST000461 |