SNP Detail For rs1887320
1.Mapping Information
Human SNP ID rs1887320
Human chromosome chr20
Human SNP position 10985350
Pig chromosome chr17
Pig SNP position 22415823
2.Annotation Information
PubMed ID25249183
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25249183
StudyGenome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.
Disease/TraitSystolic blood pressure
Initial sample11,816 Han Chinese ancestry individuals
Replication sample69,146 Han Chinese ancestry individuals
Region20p12.2
Chromosome idchr20
Chromosome position10985350
Reported geneJAG1
Mapped geneC20orf187
Upstream gene id
Downstream gene id
SNP gene ids728434
Upstream gene distance
Downstream gene distance
SNP risk allelers1887320-A
SNPsrs1887320
Merged0
SNP id current1887320
Contextintron_variant
Intergenic0
Allele frequency0.53
P value0.00000001
Pvalue mlog8
P value text
Or beta0.78
%95 Ci[0.51-1.05] unit increase
PlatformAffymetrix, Illumina [2485448] (imputed)
CNVN
Mapped traitsystolic blood pressure
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006335
Study accessionGCST002630
PubMed ID25249183
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25249183
StudyGenome-wide association study in Chinese identifies novel loci for blood pressure and hypertension.
Disease/TraitDiastolic blood pressure
Initial sample11,816 Han Chinese ancestry individuals
Replication sample69,146 Han Chinese ancestry individuals
Region20p12.2
Chromosome idchr20
Chromosome position10985350
Reported geneJAG1
Mapped geneC20orf187
Upstream gene id
Downstream gene id
SNP gene ids728434
Upstream gene distance
Downstream gene distance
SNP risk allelers1887320-A
SNPsrs1887320
Merged0
SNP id current1887320
Contextintron_variant
Intergenic0
Allele frequency0.53
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta0.43
%95 Ci[0.27-0.59] unit increase
PlatformAffymetrix, Illumina [2485448] (imputed)
CNVN
Mapped traitdiastolic blood pressure
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006336
Study accessionGCST002631