SNP Detail For rs1886449
1.Mapping Information
Human SNP ID rs1886449
Human chromosome chr13
Human SNP position 73357977
Pig chromosome chr11
Pig SNP position 50191613
2.Annotation Information
PubMed ID20686608
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/20686608
StudyGenome-wide association study of pancreatic cancer in Japanese population.
Disease/TraitPancreatic cancer
Initial sample991 Japanese ancestry cases, 5,209 Japanese ancestry controls
Replication sampleNA
Region13q22.1
Chromosome idchr13
Chromosome position73357977
Reported geneLOC730242
Mapped geneRNU6-66P - LINC00393
Upstream gene id100873770
Downstream gene id100874156
SNP gene ids
Upstream gene distance244959
Downstream gene distance98922
SNP risk allelers1886449-A
SNPsrs1886449
Merged0
SNP id current1886449
Contextintergenic_variant
Intergenic1
Allele frequency0.38
P value0.000009
Pvalue mlog5.04575749056067
P value text(recessive)
Or beta1.51
%95 Ci[1.26-1.80]
PlatformIllumina [420236]
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST000745