SNP Detail For rs188500549
1.Mapping Information
Human SNP ID rs188500549
Human chromosome chr3
Human SNP position 65521486
Pig chromosome chr13
Pig SNP position 51842697
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region3p14.1
Chromosome idchr3
Chromosome position65521486
Reported geneMAGI1
Mapped geneMAGI1
Upstream gene id
Downstream gene id
SNP gene ids9223
Upstream gene distance
Downstream gene distance
SNP risk allelers188500549-A
SNPsrs188500549
Merged0
SNP id current188500549
Contextintron_variant
Intergenic0
Allele frequency1
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.573
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264