Human SNP ID | rs1884897 |
---|---|
Human chromosome | chr20 |
Human SNP position | 6632185 |
Pig chromosome | chr17 |
Pig SNP position | 17126397 |
PubMed ID | 25673413 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 20p12.3 |
Chromosome id | chr20 |
Chromosome position | 6632185 |
Reported gene | BMP2 |
Mapped gene | CASC20 - LOC105372516 |
Upstream gene id | 101929244 |
Downstream gene id | 105372516 |
SNP gene ids | |
Upstream gene distance | 103726 |
Downstream gene distance | 98606 |
SNP risk allele | rs1884897-G |
SNPs | rs1884897 |
Merged | 0 |
SNP id current | 1884897 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.639 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | (EA) |
Or beta | 0.016 |
%95 Ci | [0.0095-0.0217] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |
PubMed ID | 25673413 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/25673413 |
Study | Genetic studies of body mass index yield new insights for obesity biology. |
Disease/Trait | Body mass index |
Initial sample | up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals |
Replication sample | up to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828 |
Region | 20p12.3 |
Chromosome id | chr20 |
Chromosome position | 6632185 |
Reported gene | BMP2 |
Mapped gene | CASC20 - LOC105372516 |
Upstream gene id | 101929244 |
Downstream gene id | 105372516 |
SNP gene ids | |
Upstream gene distance | 103726 |
Downstream gene distance | 98606 |
SNP risk allele | rs1884897-G |
SNPs | rs1884897 |
Merged | 0 |
SNP id current | 1884897 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.635 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.015 |
%95 Ci | [0.0088-0.0206] kg/m2 increase |
Platform | Affymetrix, Illumina [2550021] |
CNV | N |
Mapped trait | body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST002783 |
PubMed ID | 25282103 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25282103 |
Study | Defining the role of common variation in the genomic and biological architecture of adult human height. |
Disease/Trait | Height |
Initial sample | 253,288 European ancestry individuals |
Replication sample | 80,067 European ancestry individuals |
Region | 20p12.3 |
Chromosome id | chr20 |
Chromosome position | 6632185 |
Reported gene | BMP2 |
Mapped gene | CASC20 - LOC105372516 |
Upstream gene id | 101929244 |
Downstream gene id | 105372516 |
SNP gene ids | |
Upstream gene distance | 103726 |
Downstream gene distance | 98606 |
SNP risk allele | rs1884897-A |
SNPs | rs1884897 |
Merged | 0 |
SNP id current | 1884897 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.364 |
P value | 1E-48 |
Pvalue mlog | 48 |
P value text | |
Or beta | 0.044 |
%95 Ci | [0.038-0.05] unit increase |
Platform | Affymetrix, Illumina, Perlegen [2550858] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002647 |