SNP Detail For rs188470542
1.Mapping Information
Human SNP ID rs188470542
Human chromosome chr9
Human SNP position 79789191
Pig chromosome chr1
Pig SNP position 259462133
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region9q21.31
Chromosome idchr9
Chromosome position79789191
Reported geneIntergenic
Mapped geneTLE4 - LOC105376334
Upstream gene id7091
Downstream gene id105376334
SNP gene ids
Upstream gene distance62309
Downstream gene distance33167
SNP risk allelers188470542-T
SNPsrs188470542
Merged0
SNP id current188470542
Contextintergenic_variant
Intergenic1
Allele frequency1
P value0.0000007
Pvalue mlog6.15490195998574
P value text(AA)
Or beta0.772
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264