Human SNP ID | rs1883832 |
---|---|
Human chromosome | chr20 |
Human SNP position | 46118343 |
Pig chromosome | chr17 |
Pig SNP position | 53932000 |
PubMed ID | 25802187 |
---|---|
Journal | Hepatology |
Link | www.ncbi.nlm.nih.gov/pubmed/25802187 |
Study | Genetic variants in five novel loci including CFB and CD40 predispose to chronic hepatitis B. |
Disease/Trait | Chronic hepatitis B infection |
Initial sample | 2,514 Chinese ancestry cases, 1,130 Chinese ancestry controls |
Replication sample | 6,600 Chinese ancestry cases, 8,127 Chinese ancestry controls |
Region | 20q13.12 |
Chromosome id | chr20 |
Chromosome position | 46118343 |
Reported gene | CD40 |
Mapped gene | CD40 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 958 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1883832-T |
SNPs | rs1883832 |
Merged | 0 |
SNP id current | 1883832 |
Context | 5_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.37 |
P value | 0.000000000000003 |
Pvalue mlog | 14.5228787452803 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.14-1.25] |
Platform | Illumina [3680900] (imputed) |
CNV | N |
Mapped trait | chronic hepatitis B infection |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004239 |
Study accession | GCST002879 |