SNP Detail For rs1883711
1.Mapping Information
Human SNP ID rs1883711
Human chromosome chr20
Human SNP position 40551182
Pig chromosome chr17
Pig SNP position 48571943
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitCholesterol, total
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region20q12
Chromosome idchr20
Chromosome position40551182
Reported geneMAFB
Mapped geneLOC105372619 - LOC102724968
Upstream gene id105372619
Downstream gene id102724968
SNP gene ids
Upstream gene distance7259
Downstream gene distance22795
SNP risk allelers1883711-C
SNPsrs1883711
Merged
SNP id current1883711
Contextintergenic_variant
Intergenic1
Allele frequency0.04
P value0.000000000000002
Pvalue mlog14.698970004336
P value text
Or beta0.147
%95 Ci[0.11-0.18] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002896
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitLDL cholesterol
Initial sampleup 62,166 European ancestry individuals
Replication sampleNA
Region20q12
Chromosome idchr20
Chromosome position40551182
Reported geneMAFB
Mapped geneLOC105372619 - LOC102724968
Upstream gene id105372619
Downstream gene id102724968
SNP gene ids
Upstream gene distance7259
Downstream gene distance22795
SNP risk allelers1883711-C
SNPsrs1883711
Merged
SNP id current1883711
Contextintergenic_variant
Intergenic1
Allele frequency0.04
P value0.0000000000000004
Pvalue mlog15.397940008672
P value text
Or beta0.153
%95 Ci[0.12-0.19] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002898