Human SNP ID | rs1883711 |
---|---|
Human chromosome | chr20 |
Human SNP position | 40551182 |
Pig chromosome | chr17 |
Pig SNP position | 48571943 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 20q12 |
Chromosome id | chr20 |
Chromosome position | 40551182 |
Reported gene | MAFB |
Mapped gene | LOC105372619 - LOC102724968 |
Upstream gene id | 105372619 |
Downstream gene id | 102724968 |
SNP gene ids | |
Upstream gene distance | 7259 |
Downstream gene distance | 22795 |
SNP risk allele | rs1883711-C |
SNPs | rs1883711 |
Merged | |
SNP id current | 1883711 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.04 |
P value | 0.000000000000002 |
Pvalue mlog | 14.698970004336 |
P value text | |
Or beta | 0.147 |
%95 Ci | [0.11-0.18] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002896 |
PubMed ID | 25961943 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | up 62,166 European ancestry individuals |
Replication sample | NA |
Region | 20q12 |
Chromosome id | chr20 |
Chromosome position | 40551182 |
Reported gene | MAFB |
Mapped gene | LOC105372619 - LOC102724968 |
Upstream gene id | 105372619 |
Downstream gene id | 102724968 |
SNP gene ids | |
Upstream gene distance | 7259 |
Downstream gene distance | 22795 |
SNP risk allele | rs1883711-C |
SNPs | rs1883711 |
Merged | |
SNP id current | 1883711 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.04 |
P value | 0.0000000000000004 |
Pvalue mlog | 15.397940008672 |
P value text | |
Or beta | 0.153 |
%95 Ci | [0.12-0.19] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002898 |