SNP Detail For rs188330159
1.Mapping Information
Human SNP ID rs188330159
Human chromosome chr16
Human SNP position 60660279
Pig chromosome chr6
Pig SNP position 20343929
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region16q21
Chromosome idchr16
Chromosome position60660279
Reported geneIntergenic
Mapped geneGNPATP - LOC107984812
Upstream gene id100130060
Downstream gene id107984812
SNP gene ids
Upstream gene distance4305
Downstream gene distance85245
SNP risk allelers188330159-G
SNPsrs188330159
Merged0
SNP id current188330159
Contextupstream_gene_variant
Intergenic1
Allele frequency0.999
P value0.0000001
Pvalue mlog7
P value text(AA)
Or beta0.379
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264