Human SNP ID | rs188140481 |
---|---|
Human chromosome | chr8 |
Human SNP position | 127179427 |
Pig chromosome | chr4 |
Pig SNP position | 13282280 |
PubMed ID | 23104005 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23104005 |
Study | A study based on whole-genome sequencing yields a rare variant at 8q24 associated with prostate cancer. |
Disease/Trait | Prostate cancer |
Initial sample | 5,141 European ancestry cases, 54,444 European ancestry controls |
Replication sample | Up to 5,470 European ancestry cases, up to 7,583 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 127179427 |
Reported gene | HOXB13 |
Mapped gene | LOC105375752 - CASC19 |
Upstream gene id | 105375752 |
Downstream gene id | 103021165 |
SNP gene ids | |
Upstream gene distance | 35277 |
Downstream gene distance | 8358 |
SNP risk allele | rs188140481-A |
SNPs | rs188140481 |
Merged | 0 |
SNP id current | 188140481 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.054 |
P value | 6E-34 |
Pvalue mlog | 33.2218487496163 |
P value text | |
Or beta | 2.9 |
%95 Ci | [2.44-3.44] |
Platform | Illumina [~ 32500000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001719 |