SNP Detail For rs188140481
1.Mapping Information
Human SNP ID rs188140481
Human chromosome chr8
Human SNP position 127179427
Pig chromosome chr4
Pig SNP position 13282280
2.Annotation Information
PubMed ID23104005
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23104005
StudyA study based on whole-genome sequencing yields a rare variant at 8q24 associated with prostate cancer.
Disease/TraitProstate cancer
Initial sample5,141 European ancestry cases, 54,444 European ancestry controls
Replication sampleUp to 5,470 European ancestry cases, up to 7,583 European ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position127179427
Reported geneHOXB13
Mapped geneLOC105375752 - CASC19
Upstream gene id105375752
Downstream gene id103021165
SNP gene ids
Upstream gene distance35277
Downstream gene distance8358
SNP risk allelers188140481-A
SNPsrs188140481
Merged0
SNP id current188140481
Contextintergenic_variant
Intergenic1
Allele frequency0.054
P value6E-34
Pvalue mlog33.2218487496163
P value text
Or beta2.9
%95 Ci[2.44-3.44]
PlatformIllumina [~ 32500000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001719