SNP Detail For rs1880887
1.Mapping Information
Human SNP ID rs1880887
Human chromosome chr12
Human SNP position 41327628
Pig chromosome chr5
Pig SNP position 75631551
2.Annotation Information
PubMed ID18464913
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18464913
StudyA genome-wide association study identifies protein quantitative trait loci (pQTLs).
Disease/TraitProtein quantitative trait loci
Initial sample1,200 European ancestry individuals
Replication sampleup to 4,590 European ancestry individuals
Region12q12
Chromosome idchr12
Chromosome position41327628
Reported geneCNTN1, PDZRN4
Mapped genePDZRN4
Upstream gene id
Downstream gene id
SNP gene ids29951
Upstream gene distance
Downstream gene distance
SNP risk allelers1880887-?
SNPsrs1880887
Merged0
SNP id current1880887
Contextintron_variant
Intergenic0
Allele frequency0.03
P value0.0000000001
Pvalue mlog10
P value text(Alkaline phosphatase)
Or beta
%95 Ci
PlatformIllumina [496032]
CNVN
Mapped traitalkaline phosphatase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004533
Study accessionGCST000189