Human SNP ID | rs1880887 |
---|---|
Human chromosome | chr12 |
Human SNP position | 41327628 |
Pig chromosome | chr5 |
Pig SNP position | 75631551 |
PubMed ID | 18464913 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18464913 |
Study | A genome-wide association study identifies protein quantitative trait loci (pQTLs). |
Disease/Trait | Protein quantitative trait loci |
Initial sample | 1,200 European ancestry individuals |
Replication sample | up to 4,590 European ancestry individuals |
Region | 12q12 |
Chromosome id | chr12 |
Chromosome position | 41327628 |
Reported gene | CNTN1, PDZRN4 |
Mapped gene | PDZRN4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 29951 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1880887-? |
SNPs | rs1880887 |
Merged | 0 |
SNP id current | 1880887 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.03 |
P value | 0.0000000001 |
Pvalue mlog | 10 |
P value text | (Alkaline phosphatase) |
Or beta | |
%95 Ci | |
Platform | Illumina [496032] |
CNV | N |
Mapped trait | alkaline phosphatase measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004533 |
Study accession | GCST000189 |