SNP Detail For rs1878935
1.Mapping Information
Human SNP ID rs1878935
Human chromosome chr5
Human SNP position 158535077
Pig chromosome chr16
Pig SNP position 70713912
2.Annotation Information
PubMed ID24939585
JournalEur J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24939585
StudyGenome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.
Disease/TraitAge-related hearing impairment (interaction)
Initial sample1,489 European ancestry individuals
Replication sampleNA
Region5q33.3 x 6q24.3
Chromosome idchr5 x 6
Chromosome position158535077 x 148277158
Reported geneNR x NR
Mapped geneLOC105377681 - EBF1 x SASH1
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers1878935-? x rs4077020-?
SNPsrs1878935 x rs4077020
Merged
SNP id current
Contextdownstream_gene_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta
%95 Ci
PlatformIllumina [629437] (imputed)
CNVN
Mapped traitage-related hearing impairment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005782
Study accessionGCST002487