SNP Detail For rs1878874
1.Mapping Information
Human SNP ID rs1878874
Human chromosome chr3
Human SNP position 181317582
Pig chromosome chr13
Pig SNP position 128611947
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region3q26.33
Chromosome idchr3
Chromosome position181317582
Reported geneNR
Mapped geneSOX2-OT
Upstream gene id
Downstream gene id
SNP gene ids347689
Upstream gene distance
Downstream gene distance
SNP risk allelers1878874-T
SNPsrs1878874
Merged
SNP id current1878874
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000001
Pvalue mlog7
P value text
Or beta1.0638298
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048