SNP Detail For rs1878526
1.Mapping Information
Human SNP ID rs1878526
Human chromosome chr2
Human SNP position 118281022
Pig chromosome chr15
Pig SNP position 27268940
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region2q14.2
Chromosome idchr2
Chromosome position118281022
Reported geneINSIG2
Mapped geneLOC105373578 - LOC105373579
Upstream gene id105373578
Downstream gene id105373579
SNP gene ids
Upstream gene distance56597
Downstream gene distance178828
SNP risk allelers1878526-A
SNPsrs1878526
Merged0
SNP id current1878526
Contextintergenic_variant
Intergenic1
Allele frequency0.22
P value0.0000000001
Pvalue mlog10
P value text(LSBMD)
Or beta0.04
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482