SNP Detail For rs1878186
1.Mapping Information
Human SNP ID rs1878186
Human chromosome chr15
Human SNP position 48216203
Pig chromosome chr1
Pig SNP position 137592608
2.Annotation Information
PubMed ID26606652
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26606652
StudyGWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture.
Disease/TraitSystemic lupus erythematosus
Initial sample862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls
Replication sampleNA
Region15q21.1
Chromosome idchr15
Chromosome position48216203
Reported geneSLC12A1
Mapped geneLOC105370807, SLC12A1
Upstream gene id
Downstream gene id
SNP gene ids105370807, 6557
Upstream gene distance
Downstream gene distance
SNP risk allelers1878186-C
SNPsrs1878186
Merged0
SNP id current1878186
Contextintron_variant
Intergenic0
Allele frequency0.047
P value0.0000001
Pvalue mlog7
P value text
Or beta1.82
%95 Ci[1.45-2.28]
PlatformIllumina [580483] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003252