Human SNP ID | rs1878186 |
---|---|
Human chromosome | chr15 |
Human SNP position | 48216203 |
Pig chromosome | chr1 |
Pig SNP position | 137592608 |
PubMed ID | 26606652 |
---|---|
Journal | Arthritis Rheumatol |
Link | www.ncbi.nlm.nih.gov/pubmed/26606652 |
Study | GWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls |
Replication sample | NA |
Region | 15q21.1 |
Chromosome id | chr15 |
Chromosome position | 48216203 |
Reported gene | SLC12A1 |
Mapped gene | LOC105370807, SLC12A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105370807, 6557 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1878186-C |
SNPs | rs1878186 |
Merged | 0 |
SNP id current | 1878186 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.047 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.82 |
%95 Ci | [1.45-2.28] |
Platform | Illumina [580483] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003252 |