SNP Detail For rs1875110
1.Mapping Information
Human SNP ID rs1875110
Human chromosome chr3
Human SNP position 55529316
Pig chromosome chr13
Pig SNP position 40938982
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (Mean PAL)
Initial sampleup to 4,032 European ancestry individuals
Replication sampleNA
Region3p14.3
Chromosome idchr3
Chromosome position55529316
Reported geneERC2
Mapped geneERC2
Upstream gene id
Downstream gene id
SNP gene ids26059
Upstream gene distance
Downstream gene distance
SNP risk allelers1875110-T
SNPsrs1875110
Merged0
SNP id current1875110
Contextintron_variant
Intergenic0
Allele frequency0.95
P value0.000004
Pvalue mlog5.39794000867203
P value text(Age 20-60 years)
Or beta0.1283
%95 Ci[0.074-0.183] unit decrease
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002127