Human SNP ID | rs1874252 |
---|---|
Human chromosome | chr15 |
Human SNP position | 38670555 |
Pig chromosome | chr1 |
Pig SNP position | 148035138 |
PubMed ID | 24962325 |
---|---|
Journal | Drug Alcohol Depend |
Link | www.ncbi.nlm.nih.gov/pubmed/24962325 |
Study | Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. |
Disease/Trait | Alcohol dependence (age at onset) |
Initial sample | 685 European ancestry cases, 1,103 European ancestry controls from 118 families |
Replication sample | NA |
Region | 15q14 |
Chromosome id | chr15 |
Chromosome position | 38670555 |
Reported gene | NR |
Mapped gene | RASGRP1 - LOC105370775 |
Upstream gene id | 10125 |
Downstream gene id | 105370775 |
SNP gene ids | |
Upstream gene distance | 105749 |
Downstream gene distance | 1220 |
SNP risk allele | rs1874252-G |
SNPs | rs1874252 |
Merged | 0 |
SNP id current | 1874252 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.69 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.32 |
%95 Ci | [1.20-1.44] |
Platform | Illumina [4058415] (imputed) |
CNV | N |
Mapped trait | age at onset, alcohol dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004847, http://www.ebi.ac.uk/efo/EFO_0003829 |
Study accession | GCST002477 |