SNP Detail For rs1874252
1.Mapping Information
Human SNP ID rs1874252
Human chromosome chr15
Human SNP position 38670555
Pig chromosome chr1
Pig SNP position 148035138
2.Annotation Information
PubMed ID24962325
JournalDrug Alcohol Depend
Linkwww.ncbi.nlm.nih.gov/pubmed/24962325
StudyGenome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.
Disease/TraitAlcohol dependence (age at onset)
Initial sample685 European ancestry cases, 1,103 European ancestry controls from 118 families
Replication sampleNA
Region15q14
Chromosome idchr15
Chromosome position38670555
Reported geneNR
Mapped geneRASGRP1 - LOC105370775
Upstream gene id10125
Downstream gene id105370775
SNP gene ids
Upstream gene distance105749
Downstream gene distance1220
SNP risk allelers1874252-G
SNPsrs1874252
Merged0
SNP id current1874252
Contextupstream_gene_variant
Intergenic1
Allele frequency0.69
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.32
%95 Ci[1.20-1.44]
PlatformIllumina [4058415] (imputed)
CNVN
Mapped traitage at onset, alcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004847, http://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST002477