SNP Detail For rs1871859
1.Mapping Information
Human SNP ID rs1871859
Human chromosome chr6
Human SNP position 151577371
Pig chromosome chr1
Pig SNP position 17101822
2.Annotation Information
PubMed ID24249740
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24249740
StudyMultistage genome-wide association meta-analyses identified two new loci for bone mineral density.
Disease/TraitBone mineral density
Initial sample5,833 European ancestry females, 2,639 European ancestry males, 784 Han Chinese ancestry females, 763 Han Chinese ancestry males, 712 African American females, 409 Hispanic females
Replication sample7,010 European ancestry females, 3,772 European ancestry males, 2,980 East Asian ancestry females, 2,159 East Asian ancestry males
Region6q25.1
Chromosome idchr6
Chromosome position151577371
Reported geneC6orf97
Mapped geneCCDC170
Upstream gene id
Downstream gene id
SNP gene ids80129
Upstream gene distance
Downstream gene distance
SNP risk allelers1871859-?
SNPsrs1871859
Merged0
SNP id current1871859
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000000009
Pvalue mlog12.0457574905606
P value text(spine)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [5842825] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST002276