SNP Detail For rs187039407
1.Mapping Information
Human SNP ID rs187039407
Human chromosome chr12
Human SNP position 86947997
Pig chromosome chr5
Pig SNP position 100184420
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region12q21.32
Chromosome idchr12
Chromosome position86947997
Reported geneIntergenic
Mapped geneMGAT4C - LOC105369878
Upstream gene id25834
Downstream gene id105369878
SNP gene ids
Upstream gene distance108998
Downstream gene distance93919
SNP risk allelers187039407-T
SNPsrs187039407
Merged0
SNP id current187039407
Contextintergenic_variant
Intergenic1
Allele frequency0.999
P value0.0000006
Pvalue mlog6.22184874961635
P value text(AA)
Or beta0.296
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264