SNP Detail For rs1870323
1.Mapping Information
Human SNP ID rs1870323
Human chromosome chr11
Human SNP position 86477110
Pig chromosome chr9
Pig SNP position 22626009
2.Annotation Information
PubMed ID24025145
JournalBreast Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24025145
StudyA genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.
Disease/TraitAdverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule)
Initial sample119 Japanese ancestry cases, 105 Japanese ancestry controls
Replication sampleNA
Region11q14.2
Chromosome idchr11
Chromosome position86477110
Reported geneME3
Mapped geneME3
Upstream gene id
Downstream gene id
SNP gene ids10873
Upstream gene distance
Downstream gene distance
SNP risk allelers1870323-T
SNPsrs1870323
Merged0
SNP id current1870323
Contextintron_variant
Intergenic0
Allele frequency0.64
P value0.000002
Pvalue mlog5.69897000433601
P value text(Allelic)
Or beta2.92
%95 Ci[1.87-4.57]
PlatformIllumina [555600]
CNVN
Mapped traitchemotherapy-induced alopecia, response to antimicrotubule agent
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005400, http://www.ebi.ac.uk/efo/EFO_0005260
Study accessionGCST002177