SNP Detail For rs1869839
1.Mapping Information
Human SNP ID rs1869839
Human chromosome chr7
Human SNP position 114717488
Pig chromosome chr18
Pig SNP position 33645956
2.Annotation Information
PubMed ID22936669
JournalGut
Linkwww.ncbi.nlm.nih.gov/pubmed/22936669
StudyA genome-wide association study on a southern European population identifies a new Crohn__s disease susceptibility locus at RBX1-EP300.
Disease/TraitCrohn__s disease
Initial sample1,277 European ancestry cases, 1,488 European ancestry controls
Replication sample1,365 European ancestry cases, 1,396 European ancestry controls
Region7q31.1
Chromosome idchr7
Chromosome position114717488
Reported geneFOXP2
Mapped geneFOXP2 - MDFIC
Upstream gene id93986
Downstream gene id29969
SNP gene ids
Upstream gene distance23716
Downstream gene distance204666
SNP risk allelers1869839-?
SNPsrs1869839
Merged0
SNP id current1869839
Contextintergenic_variant
Intergenic1
Allele frequency0.64
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.2
%95 Ci[1.11-1.3]
PlatformIllumina [508934]
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001652