Human SNP ID | rs1869839 |
---|---|
Human chromosome | chr7 |
Human SNP position | 114717488 |
Pig chromosome | chr18 |
Pig SNP position | 33645956 |
PubMed ID | 22936669 |
---|---|
Journal | Gut |
Link | www.ncbi.nlm.nih.gov/pubmed/22936669 |
Study | A genome-wide association study on a southern European population identifies a new Crohn__s disease susceptibility locus at RBX1-EP300. |
Disease/Trait | Crohn__s disease |
Initial sample | 1,277 European ancestry cases, 1,488 European ancestry controls |
Replication sample | 1,365 European ancestry cases, 1,396 European ancestry controls |
Region | 7q31.1 |
Chromosome id | chr7 |
Chromosome position | 114717488 |
Reported gene | FOXP2 |
Mapped gene | FOXP2 - MDFIC |
Upstream gene id | 93986 |
Downstream gene id | 29969 |
SNP gene ids | |
Upstream gene distance | 23716 |
Downstream gene distance | 204666 |
SNP risk allele | rs1869839-? |
SNPs | rs1869839 |
Merged | 0 |
SNP id current | 1869839 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.64 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.11-1.3] |
Platform | Illumina [508934] |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001652 |