Human SNP ID | rs1867982 |
---|---|
Human chromosome | chr10 |
Human SNP position | 71767290 |
Pig chromosome | chr14 |
Pig SNP position | 80578559 |
PubMed ID | 22424883 |
---|---|
Journal | J Allergy Clin Immunol |
Link | www.ncbi.nlm.nih.gov/pubmed/22424883 |
Study | Genome-wide association study of lung function decline in adults with and without asthma. |
Disease/Trait | Pulmonary function decline |
Initial sample | 1,441 European ancestry asthma cases, 2,677 European ancestry controls |
Replication sample | 1,160 European ancestry asthma cases, 10,858 European ancestry controls |
Region | 10q22.1 |
Chromosome id | chr10 |
Chromosome position | 71767290 |
Reported gene | intergenic |
Mapped gene | CDH23, C10orf54 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64072, 64115 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1867982-? |
SNPs | rs1867982 |
Merged | 0 |
SNP id current | 1867982 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (FEV1/FVC decline in non-asthmatics) |
Or beta | 0.2018 |
%95 Ci | [0.11-0.29] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001444 |
PubMed ID | 21685187 |
Journal | Thorax |
Link | www.ncbi.nlm.nih.gov/pubmed/21685187 |
Study | Genome-wide association study of smoking behaviours in patients with COPD. |
Disease/Trait | Age at smoking initiation in chronic obstructive pulmonary disease |
Initial sample | 3,397 European ancestry cases |
Replication sample | NA |
Region | 10q22.1 |
Chromosome id | chr10 |
Chromosome position | 71767290 |
Reported gene | CDH23 |
Mapped gene | CDH23, C10orf54 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64072, 64115 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1867982-A |
SNPs | rs1867982 |
Merged | 0 |
SNP id current | 1867982 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.11 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 0.058 |
%95 Ci | unit increase |
Platform | Illumina [~ 6300000] (imputed) |
CNV | N |
Mapped trait | chronic obstructive pulmonary disease, smoking initiation |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0005670 |
Study accession | GCST001113 |