SNP Detail For rs1864982
1.Mapping Information
Human SNP ID rs1864982
Human chromosome chr5
Human SNP position 146941260
Pig chromosome chr2
Pig SNP position 154758062
2.Annotation Information
PubMed ID19581569
JournalArch Gen Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/19581569
StudyGenome-wide association study of alcohol dependence.
Disease/TraitAlcohol dependence
Initial sample476 European ancestry cases, 1,358 European ancestry controls
Replication sample1,024 European ancestry cases, 996 European ancestry controls
Region5q32
Chromosome idchr5
Chromosome position146941260
Reported genePPP2R2B
Mapped genePPP2R2B
Upstream gene id
Downstream gene id
SNP gene ids5521
Upstream gene distance
Downstream gene distance
SNP risk allelers1864982-A
SNPsrs1864982
Merged0
SNP id current1864982
Contextintron_variant
Intergenic0
Allele frequency0.13
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.36
%95 Ci[1.20-1.55]
PlatformIllumina [524396]
CNVN
Mapped traitalcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST000432