Human SNP ID | rs1864982 |
---|---|
Human chromosome | chr5 |
Human SNP position | 146941260 |
Pig chromosome | chr2 |
Pig SNP position | 154758062 |
PubMed ID | 19581569 |
---|---|
Journal | Arch Gen Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/19581569 |
Study | Genome-wide association study of alcohol dependence. |
Disease/Trait | Alcohol dependence |
Initial sample | 476 European ancestry cases, 1,358 European ancestry controls |
Replication sample | 1,024 European ancestry cases, 996 European ancestry controls |
Region | 5q32 |
Chromosome id | chr5 |
Chromosome position | 146941260 |
Reported gene | PPP2R2B |
Mapped gene | PPP2R2B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5521 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1864982-A |
SNPs | rs1864982 |
Merged | 0 |
SNP id current | 1864982 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.13 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.36 |
%95 Ci | [1.20-1.55] |
Platform | Illumina [524396] |
CNV | N |
Mapped trait | alcohol dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003829 |
Study accession | GCST000432 |