SNP Detail For rs1864325
1.Mapping Information
Human SNP ID rs1864325
Human chromosome chr17
Human SNP position 45900461
Pig chromosome chr12
Pig SNP position 17227975
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region17q21.31
Chromosome idchr17
Chromosome position45900461
Reported geneMAPT
Mapped geneMAPT
Upstream gene id
Downstream gene id
SNP gene ids4137
Upstream gene distance
Downstream gene distance
SNP risk allelers1864325-T
SNPsrs1864325
Merged0
SNP id current1864325
Contextintron_variant
Intergenic0
Allele frequency0.22
P value0.00000000005
Pvalue mlog10.3010299956639
P value text(LSBMD)
Or beta0.04
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482