Human SNP ID | rs185894886 |
---|---|
Human chromosome | chr5 |
Human SNP position | 133794260 |
Pig chromosome | chr2 |
Pig SNP position | 141713221 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 133794260 |
Reported gene | FSTL4, C5orf15 |
Mapped gene | FSTL4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23105 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs185894886-G |
SNPs | rs185894886 |
Merged | |
SNP id current | 185894886 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.01 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (EA) |
Or beta | 0.4512 |
%95 Ci | [0.27-0.63] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 133794260 |
Reported gene | FSTL4, C5orf15 |
Mapped gene | FSTL4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23105 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs185894886-G |
SNPs | rs185894886 |
Merged | |
SNP id current | 185894886 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.01 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 0.3968 |
%95 Ci | [0.23-0.57] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |