SNP Detail For rs185894886
1.Mapping Information
Human SNP ID rs185894886
Human chromosome chr5
Human SNP position 133794260
Pig chromosome chr2
Pig SNP position 141713221
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position133794260
Reported geneFSTL4, C5orf15
Mapped geneFSTL4
Upstream gene id
Downstream gene id
SNP gene ids23105
Upstream gene distance
Downstream gene distance
SNP risk allelers185894886-G
SNPsrs185894886
Merged
SNP id current185894886
Contextintergenic_variant
Intergenic0
Allele frequency0.01
P value0.0000009
Pvalue mlog6.04575749056067
P value text(EA)
Or beta0.4512
%95 Ci[0.27-0.63] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region5q31.1
Chromosome idchr5
Chromosome position133794260
Reported geneFSTL4, C5orf15
Mapped geneFSTL4
Upstream gene id
Downstream gene id
SNP gene ids23105
Upstream gene distance
Downstream gene distance
SNP risk allelers185894886-G
SNPsrs185894886
Merged
SNP id current185894886
Contextintergenic_variant
Intergenic0
Allele frequency0.01
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.3968
%95 Ci[0.23-0.57] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075