Human SNP ID | rs1858037 |
---|---|
Human chromosome | chr2 |
Human SNP position | 65371166 |
Pig chromosome | chr3 |
Pig SNP position | 80384493 |
PubMed ID | 24390342 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 65371166 |
Reported gene | SPRED2 |
Mapped gene | SPRED2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 200734 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1858037-T |
SNPs | rs1858037 |
Merged | 0 |
SNP id current | 1858037 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.52 |
P value | 0.000000000000003 |
Pvalue mlog | 14.5228787452803 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.08-1.14] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 65371166 |
Reported gene | SPRED2 |
Mapped gene | SPRED2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 200734 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1858037-T |
SNPs | rs1858037 |
Merged | 0 |
SNP id current | 1858037 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.65 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | (EA) |
Or beta | 1.09 |
%95 Ci | [1.06-1.13] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 2p14 |
Chromosome id | chr2 |
Chromosome position | 65371166 |
Reported gene | SPRED2 |
Mapped gene | SPRED2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 200734 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1858037-T |
SNPs | rs1858037 |
Merged | 0 |
SNP id current | 1858037 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.16 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (East Asian) |
Or beta | 1.19 |
%95 Ci | [1.12-1.26] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |