SNP Detail For rs1853639
1.Mapping Information
Human SNP ID rs1853639
Human chromosome chr6
Human SNP position 86897124
Pig chromosome chr14
Pig SNP position 16163216
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region6q14.3
Chromosome idchr6
Chromosome position86897124
Reported geneNR
Mapped geneLOC643962
Upstream gene id
Downstream gene id
SNP gene ids643962
Upstream gene distance
Downstream gene distance
SNP risk allelers1853639-G
SNPsrs1853639
Merged0
SNP id current1853639
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.359453092898615
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP21)
Or beta0.1761
%95 Ci[0.099-0.254] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848