SNP Detail For rs1835740
1.Mapping Information
Human SNP ID rs1835740
Human chromosome chr8
Human SNP position 97154685
Pig chromosome chr4
Pig SNP position 42473826
2.Annotation Information
PubMed ID20802479
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20802479
StudyGenome-wide association study of migraine implicates a common susceptibility variant on 8q22.1.
Disease/TraitMigraine
Initial sample2,731 European ancestry cases, 10,747 European ancestry controls
Replication sample3,202 European ancestry cases, 40,062 European ancestry controls
Region8q22.1
Chromosome idchr8
Chromosome position97154685
Reported geneMTDH, PGCP
Mapped geneLOC101927066, LOC105375655
Upstream gene id
Downstream gene id
SNP gene ids101927066, 105375655
Upstream gene distance
Downstream gene distance
SNP risk allelers1835740-A
SNPsrs1835740
Merged0
SNP id current1835740
Contextintergenic_variant
Intergenic0
Allele frequency0.21
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta1.18
%95 Ci[1.13-1.24]
PlatformIllumina [429912]
CNVN
Mapped traitmigraine disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003821
Study accessionGCST000782