SNP Detail For rs182823009
1.Mapping Information
Human SNP ID rs182823009
Human chromosome chr4
Human SNP position 54073775
Pig chromosome chr8
Pig SNP position 42899727
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region4q12
Chromosome idchr4
Chromosome position54073775
Reported genePDGFRA
Mapped geneCHIC2 - MORF4L2P1
Upstream gene id26511
Downstream gene id643915
SNP gene ids
Upstream gene distance9127
Downstream gene distance12910
SNP risk allelers182823009-C
SNPsrs182823009
Merged0
SNP id current182823009
Contextintron_variant
Intergenic1
Allele frequency0.999
P value0.000003
Pvalue mlog5.52287874528033
P value text(AA)
Or beta0.332
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264