SNP Detail For rs1825500
1.Mapping Information
Human SNP ID rs1825500
Human chromosome chr3
Human SNP position 7975268
Pig chromosome chr13
Pig SNP position 71596359
2.Annotation Information
PubMed ID25811787
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25811787
StudyModulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans.
Disease/TraitUrate levels in lean individuals
Initial sampleup to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals
Replication sampleNA
Region3p26.1
Chromosome idchr3
Chromosome position7975268
Reported geneGRM7, LMCD1_AS1
Mapped geneLOC101927394
Upstream gene id
Downstream gene id
SNP gene ids101927394
Upstream gene distance
Downstream gene distance
SNP risk allelers1825500-C
SNPsrs1825500
Merged0
SNP id current1825500
Contextintron_variant
Intergenic0
Allele frequency0.81
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.08
%95 Ci[0.047-0.113] kg/m2 decrease
PlatformAffymetrix, Illumina [at least 188473] (imputed)
CNVN
Mapped traiturate measurement, underweight body mass index status
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004531, http://www.ebi.ac.uk/efo/EFO_0005936
Study accessionGCST002830
PubMed ID25811787
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25811787
StudyModulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans.
Disease/TraitUrate levels in lean individuals
Initial sampleup to 5,529 European ancestry male individuals, up to 9,753 European ancestry female individuals
Replication sampleNA
Region3p26.1
Chromosome idchr3
Chromosome position7975268
Reported geneGRM7, LMCD1_AS1
Mapped geneLOC101927394
Upstream gene id
Downstream gene id
SNP gene ids101927394
Upstream gene distance
Downstream gene distance
SNP risk allelers1825500-C
SNPsrs1825500
Merged0
SNP id current1825500
Contextintron_variant
Intergenic0
Allele frequency0.81
P value0.000006
Pvalue mlog5.22184874961635
P value text(men)
Or beta0.129
%95 Ci[0.074-0.184] kg/m2 decrease
PlatformAffymetrix, Illumina [at least 188473] (imputed)
CNVN
Mapped traiturate measurement, underweight body mass index status
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004531, http://www.ebi.ac.uk/efo/EFO_0005936
Study accessionGCST002830