Human SNP ID | rs1819658 |
---|---|
Human chromosome | chr10 |
Human SNP position | 58153390 |
Pig chromosome | chr14 |
Pig SNP position | 100959638 |
PubMed ID | 21102463 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21102463 |
Study | Genome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci. |
Disease/Trait | Crohn__s disease |
Initial sample | 6,333 European ancestry cases, 15,056 European ancestry controls |
Replication sample | 15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios |
Region | 10q21.1 |
Chromosome id | chr10 |
Chromosome position | 58153390 |
Reported gene | UBE2D1 |
Mapped gene | LOC105378314 - IPMK |
Upstream gene id | 105378314 |
Downstream gene id | 253430 |
SNP gene ids | |
Upstream gene distance | 306031 |
Downstream gene distance | 38127 |
SNP risk allele | rs1819658-C |
SNPs | rs1819658 |
Merged | 0 |
SNP id current | 1819658 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.774 |
P value | 0.00000000000000009 |
Pvalue mlog | 16.0457574905606 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.13-1.25] |
Platform | Affymetrix, Illumina [953241] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST000879 |