SNP Detail For rs1819658
1.Mapping Information
Human SNP ID rs1819658
Human chromosome chr10
Human SNP position 58153390
Pig chromosome chr14
Pig SNP position 100959638
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region10q21.1
Chromosome idchr10
Chromosome position58153390
Reported geneUBE2D1
Mapped geneLOC105378314 - IPMK
Upstream gene id105378314
Downstream gene id253430
SNP gene ids
Upstream gene distance306031
Downstream gene distance38127
SNP risk allelers1819658-C
SNPsrs1819658
Merged0
SNP id current1819658
Contextintergenic_variant
Intergenic1
Allele frequency0.774
P value0.00000000000000009
Pvalue mlog16.0457574905606
P value text
Or beta1.19
%95 Ci[1.13-1.25]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879