Human SNP ID | rs181947843 |
---|---|
Human chromosome | chr12 |
Human SNP position | 108153610 |
Pig chromosome | chr14 |
Pig SNP position | 45211244 |
PubMed ID | 24927181 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/24927181 |
Study | Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. |
Disease/Trait | Acne (severe) |
Initial sample | 1,893 European ancestry cases, 5,132 European ancestry controls |
Replication sample | 2,063 European ancestry cases, 1,970 European ancestry controls |
Region | 12q23.3 |
Chromosome id | chr12 |
Chromosome position | 108153610 |
Reported gene | CORO1C, ASCL4, ISCU, LOC728739, FICD, PRDM4, PWP1, CMKLR1, SART3, BTBD11, SELPLG, TMEM119, WSCD2 |
Mapped gene | WSCD2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9671 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs181947843-A |
SNPs | rs181947843 |
Merged | 0 |
SNP id current | 181947843 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.0034 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 2.17 |
%95 Ci | [1.32-3.58] |
Platform | Illumina [7300000] (imputed) |
CNV | N |
Mapped trait | acne |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003894 |
Study accession | GCST002481 |