SNP Detail For rs181947843
1.Mapping Information
Human SNP ID rs181947843
Human chromosome chr12
Human SNP position 108153610
Pig chromosome chr14
Pig SNP position 45211244
2.Annotation Information
PubMed ID24927181
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/24927181
StudyGenome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
Disease/TraitAcne (severe)
Initial sample1,893 European ancestry cases, 5,132 European ancestry controls
Replication sample2,063 European ancestry cases, 1,970 European ancestry controls
Region12q23.3
Chromosome idchr12
Chromosome position108153610
Reported geneCORO1C, ASCL4, ISCU, LOC728739, FICD, PRDM4, PWP1, CMKLR1, SART3, BTBD11, SELPLG, TMEM119, WSCD2
Mapped geneWSCD2
Upstream gene id
Downstream gene id
SNP gene ids9671
Upstream gene distance
Downstream gene distance
SNP risk allelers181947843-A
SNPsrs181947843
Merged0
SNP id current181947843
Contextintron_variant
Intergenic0
Allele frequency0.0034
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta2.17
%95 Ci[1.32-3.58]
PlatformIllumina [7300000] (imputed)
CNVN
Mapped traitacne
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003894
Study accessionGCST002481