Human SNP ID | rs181840477 |
---|---|
Human chromosome | chr3 |
Human SNP position | 152775700 |
Pig chromosome | chr13 |
Pig SNP position | 100980145 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1 |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 3q25.2 |
Chromosome id | chr3 |
Chromosome position | 152775700 |
Reported gene | Intergenic |
Mapped gene | LOC102724289 - ATP5LP5 |
Upstream gene id | 102724289 |
Downstream gene id | 100287091 |
SNP gene ids | |
Upstream gene distance | 93956 |
Downstream gene distance | 24734 |
SNP risk allele | rs181840477-T |
SNPs | rs181840477 |
Merged | 0 |
SNP id current | 181840477 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.999 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | (AA) |
Or beta | 2.235 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | forced expiratory volume, response to bronchodilator |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366 |
Study accession | GCST003262 |