SNP Detail For rs181654
1.Mapping Information
Human SNP ID rs181654
Human chromosome chr10
Human SNP position 117620145
Pig chromosome chr14
Pig SNP position 139119117
2.Annotation Information
PubMed ID22837378
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22837378
StudyGenome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.
Disease/TraitAirflow obstruction
Initial sampleup to 3,368 European ancestry cases, up to 29,507 European ancestry controls
Replication sample331 European ancestry cases, 2,550 European ancestry controls
Region10q26.11
Chromosome idchr10
Chromosome position117620145
Reported geneEMX2
Mapped geneEMX2 - LOC102724627
Upstream gene id2018
Downstream gene id102724627
SNP gene ids
Upstream gene distance70599
Downstream gene distance114789
SNP risk allelers181654-?
SNPsrs181654
Merged0
SNP id current181654
Contextintergenic_variant
Intergenic1
Allele frequency0.72
P value0.0000001
Pvalue mlog7
P value text(no asthma)
Or beta0.81
%95 Ci
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892
Study accessionGCST001621