Human SNP ID | rs181654 |
---|---|
Human chromosome | chr10 |
Human SNP position | 117620145 |
Pig chromosome | chr14 |
Pig SNP position | 139119117 |
PubMed ID | 22837378 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22837378 |
Study | Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction. |
Disease/Trait | Airflow obstruction |
Initial sample | up to 3,368 European ancestry cases, up to 29,507 European ancestry controls |
Replication sample | 331 European ancestry cases, 2,550 European ancestry controls |
Region | 10q26.11 |
Chromosome id | chr10 |
Chromosome position | 117620145 |
Reported gene | EMX2 |
Mapped gene | EMX2 - LOC102724627 |
Upstream gene id | 2018 |
Downstream gene id | 102724627 |
SNP gene ids | |
Upstream gene distance | 70599 |
Downstream gene distance | 114789 |
SNP risk allele | rs181654-? |
SNPs | rs181654 |
Merged | 0 |
SNP id current | 181654 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.72 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (no asthma) |
Or beta | 0.81 |
%95 Ci | |
Platform | Affymetrix, Illumina [up to 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892 |
Study accession | GCST001621 |