Human SNP ID | rs181519890 |
---|---|
Human chromosome | chr4 |
Human SNP position | 86762562 |
Pig chromosome | chr8 |
Pig SNP position | 141418958 |
PubMed ID | 24159190 |
---|---|
Journal | Eur Heart J |
Link | www.ncbi.nlm.nih.gov/pubmed/24159190 |
Study | Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. |
Disease/Trait | Symmetrical dimethylarginine levels |
Initial sample | 5110 European ancestry individuals |
Replication sample | NA |
Region | 4q21.3 |
Chromosome id | chr4 |
Chromosome position | 86762562 |
Reported gene | NR |
Mapped gene | PTPN13 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5783 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs181519890-C |
SNPs | rs181519890 |
Merged | 0 |
SNP id current | 181519890 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.003 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.063 |
%95 Ci | [0.60-1.52] unit increase |
Platform | Affymetrix, Illumina [10085758] (imputed) |
CNV | N |
Mapped trait | serum dimethylarginine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005418 |
Study accession | GCST002239 |